Systems Biology
Systems Biology seeks to understand how a biological system operates as a whole by measuring, modeling, and probing interactions between components in the system (e.g., genes, proteins, metabolites) rather than studying the components in isolation. To gain such an understanding, systems biology studies follow an iterative approach of collecting quantitative experimental data, computational and statistical modeling of these data, and implementing these models to make predictions in new experimental conditions. These studies can guide the next set of experiments to better model and understand how a system functions via the interaction of its parts. Example biological systems analyzed by these methods include cellular signaling networks in microbial cells, dynamic processes during viral infection, and multi-cellular interactions in animal models and human patients; each system of study presents unique opportunities and challenges in collecting, analyzing and modeling the data. The resulting understanding gained from these studies can impact disease therapy (e.g., identifying new drug targets or biomarkers), biotechnology applications (e.g., determining methods to optimize biofuel production), as well as our general understanding of how biological networks operate. Students working in the research groups within the Systems Biology focus group will have the unique opportunity to work in a highly collaborative environment and gain inter-disciplinary training in both biological and computational fields. CMB has compiled a list of courses relevant to the Systems Biology focus group. Students interested in this group may also be interested in the new QBio doctoral minor in quantitative biology that was designed to be compatible with a PhD in CMB (note: please review CMB’s minor overlap policy).
Focus Group Chair Megan McClean
Biomedical Engineering Department
Biological signal processing
mmcclean@wisc.edu
Focus Group Members
Daniel Amador-Noguez
Credentials: Bacteriology Department
Position title: Microbial Systems Biology
Email:
amadornoguez
Matthew Anderson
Credentials: Genetics
Position title: Genetic diversity of microbial systems
Email:
mzanderson
Richard Anderson
Credentials: Medical School Dean's Office
Position title: Molecular and cellular signaling and cancer
Email:
raanders
Alan Attie
Credentials: Biochemistry Department
Position title: Molecular genetics of diabetes & insulin resistance; cell biology of lipoprotein assembly, cholesterol trafficking
Email:
adattie
Jason Cantor
Credentials: Biochemistry Department
Position title: Influence of environmental factors on human cell metabolism
Email:
jcantor
Silvia Cavagnero
Credentials: Chemistry Department
Position title: Protein folding and aggregation in the cell, molecular chaperones, role of the ribosome in protein folding
Email:
cavagnero
Josh Coon
Credentials: Biomolecular Chemistry
Position title: Systems and quantitative biology
Email:
jcoon
Scott Coyle
Credentials: Biochemistry Department
Position title: Understanding and engineering cell behavior.
Email:
smcoyle
Jared Cregg
Credentials: Neuroscience Department
Position title: Brainstem Circuits for Motor Control
Email:
jcregg
Huy Dinh
Credentials: Oncology Department
Position title: Computational biology, Tumor microenvironment heterogeneity
Email:
huy.dinh
Jing Fan
Credentials: Medical Microbiology and Immunology Department
Position title: Mammalian cellular metabolism; metabolic regulation; tumor microenvironment
Email:
jfan4
David Gamm
Credentials: Ophthalmology and Visual Sciences Department
Position title: Retinal stem cell biology
Email:
dgamm
Audrey Gasch
Credentials: Genetics Department
Position title: Genomic expression in response to stress
Email:
agasch
Ying Ge
Credentials: Cell & Regenerative Biology Department
Position title: Systems biology, cardiac disease and regeneration
Email:
ge2
Gaelen Hess
Credentials: Biomolecular Chemistry
Position title: High-Throughput Mammalian Functional Genomics
Email:
ghess3
Chris Hittinger
Credentials: Genetics Department
Position title: Molecular evolution of gene networks
Email:
cthittinger
Zhen Huang
Credentials: Neurology Department
Position title: Cerebral cortex development, neuronel migration, dendrite development
Email:
z.huang
Jiaoyang Jiang
Credentials: Pharmaceutical Sciences
Position title: Protein glycosylation in biology and disease
Email:
jiaoyang.jiang
Betul Kaçar
Credentials: Bacteriology Department
Position title: Origins and early evolution of life, ancient proteins, functional evolution over geologic time
Email:
bkacar
Melissa Kinney
Credentials: Biomedical Engineering Department
Position title: Stem cell systems biology
Email:
melissa.kinney
Pamela Kreeger
Credentials: Pathology and Laboratory Medicine Department
Position title: Tissue engineering, systems biology, tumor microenvironment
Email:
kreeger
Robert Landick
Credentials: Biochemistry Department
Position title: RNA polymerase structure, function, and regulation
Email:
rlandick
Mark Mandel
Credentials: Medical Microbiology & Immunology Department
Position title: Genetic analysis of bacterial colonization
Email:
mmandel
Phillip Newmark
Credentials: Integrative Biology Department
Position title: Regeneration and germ cell development in flatworms
Email:
pnewmark
Brian Parks
Credentials: Nutritional Sciences Department
Position title: Causal genes of metabolic diseases
Email:
brian.w.parks
Bret Payseur
Credentials: Genetics
Position title: Evolution of extreme phenotypes
Email:
payseur
Srivatsan Raman
Credentials: Biochemistry Department
Position title: Synthetic biology, protein design, metabolic engineering, allostery, directed evolution
Email:
sraman4
Timothy Rhoads
Credentials: Nutritional Sciences Department
Position title: Gene expression regulation of metabolism and aging
Email:
timothy.rhoads
Krishanu Saha
Credentials: Biomolecular Chemistry Department
Position title: Human stem cell engineering
Email:
ksaha
Nathaniel Sharp
Credentials: Genetics Department
Position title: Spontaneous mutation rate and spectrum
Email:
nathaniel.sharp
Michael Sussman
Credentials: Biochemistry Department
Position title: Genome technologies applied to the plasma membrane of eukaryotes: signal transduction and bioenergetics
Email:
msussman
Chad Vezina
Credentials: Comparative Biosciences Department
Position title: Urinary dysfunction in aging men
Email:
cmvezina
Han Wang
Credentials: Integrative Biology Department
Position title: Neurogenetics and Behavior
Email:
han.wang
Jade Wang
Credentials: Bacteriology Department
Position title: Stress and genome integrity in bacteria
Email:
wang
Donna Werling
Credentials: Genetics Department
Position title: Genomics of brain development and disorders
Email:
dwerling
Marvin Wickens
Credentials: Biochemistry Department
Position title: RNA and gene control; role of RNA regulation in development and the nervous system
Email:
wickens
Yongna Xing
Credentials: Oncology Department
Position title: Cell signaling related to caner, structural biology, biochemistry, proteomics
Email:
xing
Jerry Yin
Credentials: Genetics Department
Position title: Cellular/molecular mechanisms of memory formation and psychiatric dysfunction
Email:
jcyin
John Yin
Credentials: Chemical & Biological Engineering Department
Position title: Molecular virology, computational biology, biochemical engineering
Email:
john.yin
John-Paul (JP) Yu
Credentials: Radiology Department
Position title: Neuroimaging, neuropsychiatric disorders, autism spectrum disorder, schizophrenia, systems neuroscience
Email:
jpyu